I am currently working on my Ph.D. in Bioengineering at the University of Pennsylvania. As a member of the Penn Image Computing and Science Laboratory (PICSL), I have been examining techniques for the processing and analysis of diffusion tensor magnetic resonance imaging data.

Publications

Duda J, Sun H, Zhang H, Simon T, Gee J. Fiber statistics in the corpus callosum. Proc. Intl. Soc. Mag. Reson. Med. 14 2007, In Preparation.
Sun H, Yushkevich PA, Zhang H, Cook PA, Duda JT, Simon TJ, Gee JC. Shape-Based Normalization of the Corpus Callosum for DTI Connectivity Analysis. IEEE Transcations on Medical Imaging. In Press.
Duda J, Simon T, Gee J. Examining Tissue Micro-Architecture via Interrogation of Diffusion Tensor Fiber Tractography. Human Brain Mapping 2006. Florence, Italy.
Duda J, Avants B, Gee J. A Tool for the Quantitative Comparison of Fiber Tractography. Human Brain Mapping 2006. Human Brain Mapping 2006.
Duda J, Zhang H, Simon T, Gee J. Fiber Tract Based Interrogation of White Matter. Proc. Intl. Soc. Mag. Reson. Med. 14 2006, 1:2745.
Schwartz ED, Duda J, Shumsky JS, Cooper ET and Gee J. Spinal cord diffusion tensor imaging and fiber tracking can identify white matter tract disruption and glial scar orientation following lateral funiculotomy. J Neurotrauma. 2005 December, 22(12):1388-1398.
Gee JC, Zhang H, Dubb A, Avants BA, Yushkevich PA, Duda JT. Automated DTI-based Parcellation of Brain White Matter. Human Brain Mapping 2005. Toronto, Ontario, Canada.
Gee JC, Zhang H, Dubb A, Avants BA, Yushkevich PA and Duda JT. Anatomy-based visualizations of diffusion tensor images of brain white matter. Chapter In: Visualization and Image Processing of Tensor Fields, Springer, 2005
Avants B, Ng L, Sundaram T, Duda JT, Gee JC. Non-Rigid Image Registration. Chapter In: Insight Into Images: Theory for Segmentation, Registration and Image Analysis. Natick, MA: AK Peters, 2004.
Duda J, Rivera M, Alexander D, Gee JC. A Method for Non-Rigid Registration of Diffusion Tensor Magnetic Resonance Images. Proceedings of SPIE International Symposium on Medical Imaging 2003 Vol. 5032:1186-1196
Gee JC, Alexander D, Rivera M, Duda J. Non-Rigid Registration of Diffusion Tensor MR Images. Proceedings of IEEE International Symposium on Biomedical Imaging. 2002 July, 1:477-480.
Wolf RL, Duda JT, Song HK, Wright AC, Saha PK, Mohler ER, Wehrli FW. Semi-automatic Analysis of Atherosclerotic Lesion Burden Using an Ellipse-Fitting and Histogram Based Thresholding Method. Proc. Intl. Soc. Mag. Reson. Med. 10 2002, 1:1569.
Duda JT, Song HK, Wolf R, Wright A, Gee JC, Wehrli FW. Method for Quantitative Assessment of Atherosclerotic Lesion Burden on the Basis of High-Resolution Black-Blood MRI. Proceedings of SPIE International Symposium on Medical Imaging 2002 Vol. 4684:1798-1806.
Diehl B, Najm I, Ruggieri P, Tkach J, Mohamed A, Morris H, Wyllie E, Fisher E, Duda J, Lieber M, Bingaman B, Luders HO. Postictal Diffusion-Weighted Imaging for the Localization of Focal Epileptogenic Areas in Temporal Lobe Epilepsy. Epilepsia 2001 Jan; 42(1):21-8.
Rudick R, Fisher E, Lee J, Duda J, Simon J. Brain Atrophy in Relapsing Multiple Sclerosis: Relationship to Relapse, EDSS, and Treatment with Interferon β-1a. Multiple Sclerosis 2000 Dec; 6(6):365-72.
Basser PJ, Pajevic S, Pierpaoli C, Duda J, Aldroubi A. In vivo fiber tractography using DT-MRI data. Magn Reson Med. 2000 Oct;44(4):625-32.
Basser P, Pajevic S, Peirpaoli C, Aldroubi A, Duda J. Fiber-Tractography in Human Brain Using Diffusion Tensor MRI (DT-MRI). Proc. Intl. Soc. Mag. Reson. Med. 8 2000, 1:784.
Diehl B, Najm I, Ruggieri P, Foldvary N, Mohamed A, Tkach J, Morris H, Barnett G, Fisher E, Duda J, Luders HO. Peri-ictal Diffusion-Weighted Imaging in a Case of Lesional Epilepsy. Epilepsia 1999 Nov; 40(11):1667-71.