edu.upenn.cis.taggers.malignancy
Class MalignancySegmentationEvaluator

java.lang.Object
  extended by edu.umass.cs.mallet.base.fst.TransducerEvaluator
      extended by edu.umass.cs.mallet.base.fst.MultiSegmentationEvaluator
          extended by edu.upenn.cis.taggers.malignancy.MalignancySegmentationEvaluator

public class MalignancySegmentationEvaluator
extends edu.umass.cs.mallet.base.fst.MultiSegmentationEvaluator


Field Summary
 
Fields inherited from class edu.umass.cs.mallet.base.fst.TransducerEvaluator
alwaysEvaluateWhenFinished, checkpointFilePrefix, checkpointIterationsToSkip, checkpointTransducer, numIterationsToSkip, numIterationsToWait, printModelAtEnd, viterbiOutput, viterbiOutputEncoding, viterbiOutputFilePrefix, viterbiOutputIterationsToSkip, viterbiOutputIterationsToWait
 
Constructor Summary
MalignancySegmentationEvaluator(java.lang.String[] segmentStartTags, java.lang.String[] segmentContinueTags)
           
 
Method Summary
 java.lang.String output(edu.umass.cs.mallet.base.fst.Transducer crf, edu.umass.cs.mallet.base.types.InstanceList eval)
           
 
Methods inherited from class edu.umass.cs.mallet.base.fst.MultiSegmentationEvaluator
batchTest, evaluate, numIncorrectSegments, test
 
Methods inherited from class edu.umass.cs.mallet.base.fst.TransducerEvaluator
getCheckpointFilePrefix, getCheckpointIterationsToSkip, getCheckpointTransducer, getNumIterationsToSkip, getNumIterationsToWait, getViterbiOutput, getViterbiOutputEncoding, getViterbiOutputFilePrefix, getViterbiOutputIterationsToSkip, getViterbiOutputIterationsToWait, isAlwaysEvaluateWhenFinished, isPrintModelAtEnd, setAlwaysEvaluateWhenFinished, setCheckpointFilePrefix, setCheckpointIterationsToSkip, setCheckpointTransducer, setNumIterationsToSkip, setNumIterationsToWait, setPrintModelAtEnd, setViterbiOutput, setViterbiOutputEncoding, setViterbiOutputFilePrefix, setViterbiOutputIterationsToSkip, setViterbiOutputIterationsToWait, shouldDoEvaluate
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

MalignancySegmentationEvaluator

public MalignancySegmentationEvaluator(java.lang.String[] segmentStartTags,
                                       java.lang.String[] segmentContinueTags)
Method Detail

output

public java.lang.String output(edu.umass.cs.mallet.base.fst.Transducer crf,
                               edu.umass.cs.mallet.base.types.InstanceList eval)
                        throws java.io.IOException
Throws:
java.io.IOException