ESMARConf 2023 - Empowering Systematic Reviews with the R Version of Paperfetcher
Recording of our conference presentation on YouTube.
Umbrella sampling with OpenMM and apallath/WHAM - part 2
Jupyter NotebookJupyter notebook tutorial demonstrating hysteresis in free energy profiles constructed from umbrella sampling along a poor coordinate.
View Binder >>Umbrella sampling with OpenMM and apallath/WHAM - part 1
Jupyter NotebookJupyter notebook tutorial demonstrating umbrella sampling on langevin dynamics simulations of a particle in an analytical potential, and free energy profile construction using WHAM.
View Binder >>Handsearching with Paperfetcher
Jupyter NotebookJupyter notebook tutorial on handsearching using the Paperfetcher Python package.
View Binder >>Citation searching with Paperfetcher
Jupyter NotebookJupyter notebook tutorial on citation searching using the Paperfetcher Python package.
View Binder >>Introduction to the bootstrap
Jupyter NotebookJupyter notebook tutorial on bootstrapping and related uncertainty quantification techniques for timeseries data.
View Binder >>
Tutorial on good programming practices
PDFSlide deck from my tutorial session on good programming practices, with a focus on Python. [Patel Group Tutorials, Summer 2021]
View on Google Drive >>Tutorial on barostats in molecular dynamics
PDFSlide deck from my tutorial session on pressure coupling algorithms, with a focus on GROMACS. [Patel Group Tutorials, Summer 2020]
View on Google Drive >>Tutorial on integrators in molecular dynamics
PDFSlide deck from my tutorial session on MD integrators, with a focus on GROMACS. [Patel Group Tutorials, Summer 2020]
View on Google Drive >>Writing statements of purpose for graduate school
PDFSlide deck from my lecture on writing statements of purpose for graduate school. [HS423 Writing Lab, Spring 2019, IIT Gandhinagar]
View on Google Drive >>